Knowing one's place: a free-energy approach to pattern regulation.

Understanding how organisms establish their form during embryogenesis and regeneration represents a major knowledge gap in biological pattern formation. It has been recently suggested that morphogenesis could be understood in terms of cellular information processing and the ability of cell groups to model shape. Here, we offer a proof of principle that self-assembly is an emergent property of cells that share a common (genetic and epigenetic) model of organismal form. This behaviour is formulated in terms of variational free-energy minimization-of the sort that has been used to explain action and perception in neuroscience. In brief, casting the minimization of thermodynamic free energy in terms of variational free energy allows one to interpret (the dynamics of) a system as inferring the causes of its inputs-and acting to resolve uncertainty about those causes. This novel perspective on the coordination of migration and differentiation of cells suggests an interpretation of genetic codes as parametrizing a generative model-predicting the signals sensed by cells in the target morphology-and epigenetic processes as the subsequent inversion of that model. This theoretical formulation may complement bottom-up strategies-that currently focus on molecular pathways-with (constructivist) top-down approaches that have proved themselves in neuroscience and cybernetics

Predictions for Impurity-Induced Tc Suppression in the High-Temperature Superconductors

We address the question of whether anisotropic superconductivity is compatible with the evidently weak sensitivity of the critical temperature Tc to sample quality in the high-Tc copper oxides. We examine this issue quantitatively by solving the strong-coupling Eliashberg equations numerically as well as analytically for s-wave impurity scattering within the second Born approximation. For pairing interactions with a characteristically low energy scale, we find an approximately universal dependence of the d-wave superconducting transition temperature on the planar residual resistivity which is independent of the details of the microscopic pairing. These results, in conjunction with future systematic experiments, should help elucidate the symmetry of the order parameter in the cuprates.Comment: 13 pages, 4 figures upon request, revtex version